RnoEX0018687 @ rn6
Exon Skipping
Gene
ENSRNOG00000007917 | Cd46
Description
CD46 molecule [Source:RGD Symbol;Acc:3061]
Coordinates
chr13:113787349-113795609:-
Coord C1 exon
chr13:113795574-113795609
Coord A exon
chr13:113794238-113794298
Coord C2 exon
chr13:113787349-113787462
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTATTTCCCTTTTCTTGCAGTTG
3' ss Score
10.45
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
ATGCATGGATCATTGCTTTGATTGTTGTTACTTCAG
Seq A exon
TTGTTGGAGTTATTGTAATTTGTCTCATCATACTCAGGTGTTCTGAGTACAGGAAGAAATG
Seq C2 exon
AAATGTATCTGCAGCAAGATGAAAAATCCCACGTGTGGAAGTCATTACTGTTCCATTTTTGAAAACTGGTTCTTCAAGTCTGCAAAAGCAAAATTATATATTTGCAGGAGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007917_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGGATCATTGCTTTGATTGT
R:
AGCTCCTGCAAATATATAATTTTGCT
Band lengths:
147-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]