GgaEX7010805 @ galGal4
Exon Skipping
Gene
ENSGALG00000001175 | C4BPA
Description
complement component 4 binding protein, alpha chain precursor [Source:RefSeq peptide;Acc:NP_989995]
Coordinates
chr26:2634717-2638488:+
Coord C1 exon
chr26:2634717-2634743
Coord A exon
chr26:2635195-2635261
Coord C2 exon
chr26:2638437-2638488
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTTTTTAATTCTTCCTCAAGTGA
3' ss Score
4.48
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GTGCTTATATTATTGCCATCATCTGTA
Seq A exon
TGATCGTGGCAGTTCTGGTGTTCCTGGCAGCCTTCTGGATCTTTAAGAAATTCATTTCACAGGAAGG
Seq C2 exon
GAAGAGTGACAGCACTCCACATACTGCCAAATATACGAGCTGTAAAGCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001175-'17-25,'17-20,18-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTATATTATTGCCATCATCTGT
R:
GCTTTACAGCTCGTATATTTGGCA
Band lengths:
75-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]