MmuEX6030228 @ mm10
Exon Skipping
Gene
ENSMUSG00000016493 | Cd46
Description
CD46 antigen, complement regulatory protein [Source:MGI Symbol;Acc:MGI:1203290]
Coordinates
chr1:195036826-195064723:-
Coord C1 exon
chr1:195064688-195064723
Coord A exon
chr1:195062353-195062413
Coord C2 exon
chr1:195036826-195042013
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCCTTTTCTTGTAGTTG
3' ss Score
8.94
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
ATGCATGGATTATTGCTTTGATTGTTATTACGTCAA
Seq A exon
TTGTTGGAGTTTTTATACTTTGTCTCATTGTGCTCAGGTGTTTTGAGCACAGGAAGAAAAC
Seq C2 exon
AAATGTATCTGCAGCAAGATGAAAATCTCATGTGTGGAAGTCATTACTGTTCCATTTTTGAAAACTGGATCTTCAAGTCTGGCAAACGCAAAATTATATATTTGCAGGAGCTTCATTTGTGGTAATGTGTGTGTTTCTAGTGTAAATCAAATCTGTGTTTATAAATACAATCTGTATCTAACCTCTCTACTATAACCTCACATTTCAGCCCCTGCAGCTCACCAAGGGTTCTCAGTATCCAACCATGAGTGCCTGTGTACTAAGCAGAATGTTCTGCCTGTGACATGGTATTTGCAGGAAGAAGGTCACATTTCCAAGCAGACACCAAACCCTGTCCAGTTGGAGCTCTTATCCCCATGCCTCACACTTTCACTGCACATAATGGCTGTGAATTAACCACATCTGTGCCTTCCACACTCAGTCTGTCACCTGAAATGCTTAATATTCTCTCTAAATCCATGTACCTCTAACGCCAATGCATGTCCTACCAGTCCTGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016493-'17-21,'17-19,18-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCATGGATTATTGCTTTGATTGT
R:
TAATTTTGCGTTTGCCAGACTTGA
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types