BtaEX0000708 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr12:33995609-33999497:-
Coord C1 exon
chr12:33999367-33999497
Coord A exon
chr12:33998447-33998524
Coord C2 exon
chr12:33995609-33995698
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACTCCTTTCCCTCTCTCAGGAC
3' ss Score
10.48
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CAGATGCGACCTCAGACAATTTCGGATACAACCTGTTGACATTCATCATCCTCTACAACAATCTGATTCCCATCAGTCTGCTGGTGACTCTCGAGGTTGTGAAGTACACACAAGCCCTCTTCATAAACTGG
Seq A exon
GACACAGATATGTATTATCTAGGAAATGACACCCCTGCCATGGCCAGGACGTCAAACCTTAATGAAGAGCTTGGCCAG
Seq C2 exon
GTAAAATATCTATTTTCTGACAAAACAGGAACTCTGACATGCAATATCATGAACTTCAAAAAGTGTAGCATTGCTGGGGTAACCTATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019529-'13-15,'13-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(15.6=100)
A:
PF0012215=E1-E2_ATPase=PD(0.1=0.0)
C2:
PF127102=HAD=PU(6.6=86.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGACCTCAGACAATTTCGG
R:
TGCATGTCAGAGTTCCTGTTTTGT
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development