HsaEX6039657 @ hg19
Exon Skipping
Gene
ENSG00000132932 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:13533]
Coordinates
chr13:26127931-26133199:+
Coord C1 exon
chr13:26127931-26128058
Coord A exon
chr13:26129129-26129206
Coord C2 exon
chr13:26133111-26133199
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTCTCTCTCTCTCAGGAC
3' ss Score
12.38
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
ACACCACCTCAGATAATTTTGGATACAACCTACTGACGTTCATCATCTTATACAACAATCTTATTCCCATCAGTCTGTTGGTGACTCTTGAGGTTGTGAAGTATACTCAAGCCCTTTTCATAAACTGG
Seq A exon
GACACAGATATGTATTATATAGGAAATGACACTCCTGCCATGGCCAGGACATCAAACCTTAATGAAGAGCTTGGGCAG
Seq C2 exon
GTGAAATATCTCTTTTCTGACAAGACTGGAACGCTTACATGCAATATCATGAACTTTAAGAAGTGCAGCATTGCCGGAGTAACCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132932-'12-16,'12-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(15.3=100),PF138431=DDE_Tnp_1_7=PD(2.7=4.7)
A:
PF0012215=E1-E2_ATPase=PD(0.1=0.0)
C2:
PF127102=HAD=PU(6.4=86.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCACCTCAGATAATTTTGGA
R:
TGCATGTAAGCGTTCCAGTCT
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)