Special

GgaEX6006306 @ galGal4

Exon Skipping

Gene
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176036542-176039206:+
Coord C1 exon
chr1:176036542-176036669
Coord A exon
chr1:176037369-176037446
Coord C2 exon
chr1:176039118-176039206
Length
78 bp
Sequences
Splice sites
3' ss Seq
TAATTTTGCTCTCATTTCAGGAC
3' ss Score
9.39
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AAATGCTGTCTGTCAACTTTGGGTACAATCTGCTGACATTTATTATCTTGTACAACAACCTTATTCCAATCAGTCTTTTGGTGACGTTAGAAGTTGTCAAATTCACTCAAGCTCTTTTTATAAATTGG
Seq A exon
GACATGGATATGTATTATCCTGAAACAGACACACCTGCAATGGCTAGAACCTCAAATCTTAATGAGGAACTTGGGCAG
Seq C2 exon
GTAAAGTACCTGTTTTCAGATAAAACAGGTACTCTAACATGTAATATCATGAACTTCAAGAAATGTAGTATTGCTGGAGTGACATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'18-21,'18-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.106 C2=0.000
Domain overlap (PFAM):

C1:
PF0012215=E1-E2_ATPase=PD(15.1=95.3)
A:
PF0012215=E1-E2_ATPase=PD(0.1=0.0)
C2:
PF127102=HAD=PU(36.6=86.7)


Main Inclusion Isoform:


Main Skipping Isoform:
ENSGALT00000027641fB5303


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAACAACCTTATTCCAATCAGT
R:
CCATATGTCACTCCAGCAATACT
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]