GgaEX6006306 @ galGal3
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
NA
Coordinates
chr1:181083064-181085728:+
Coord C1 exon
chr1:181083064-181083191
Coord A exon
chr1:181083891-181083968
Coord C2 exon
chr1:181085640-181085728
Length
78 bp
Sequences
Splice sites
3' ss Seq
TAATTTTGCTCTCATTTCAGGAC
3' ss Score
9.39
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AAATGCTGTCTGTCAACTTTGGGTACAATCTGCTGACATTTATTATCTTGTACAACAACCTTATTCCAATCAGTCTTTTGGTGACGTTAGAAGTTGTCAAATTCACTCAAGCTCTTTTTATAAATTGG
Seq A exon
GACATGGATATGTATTATCCTGAAACAGACACACCTGCAATGGCTAGAACCTCAAATCTTAATGAGGAACTTGGGCAG
Seq C2 exon
GTAAAGTACCTGTTTTCAGATAAAACAGGTACTCTAACATGTAATATCATGAACTTCAAGAAATGTAGTATTGCTGGAGTGACATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(15.3=100)
A:
PF0012215=E1-E2_ATPase=PD(0.1=0.0)
C2:
PF127102=HAD=PU(6.4=86.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAACAACCTTATTCCAATCAGT
R:
CCATATGTCACTCCAGCAATACT
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]