MmuEX6041883 @ mm10
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60023449-60027052:-
Coord C1 exon
chr14:60026925-60027052
Coord A exon
chr14:60026141-60026218
Coord C2 exon
chr14:60023449-60023537
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCCCCCATTTTCTCTTTCAGGAC
3' ss Score
13.37
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACACGAACTCAGATAATTTTGGCTACAACTTGCTAACGTTTATCATCTTGTACAACAATCTGATTCCTATCAGCCTGCTGGTGACACTTGAGGTTGTGAAATACACGCAAGCCCTCTTCATAAACTGG
Seq A exon
GACATGGATATGTATTATATTGAAAATGACACTCCTGCAATGGCCAGGACATCAAACCTCAACGAAGAGCTGGGGCAG
Seq C2 exon
GTAAAATACCTGTTTTCAGACAAGACTGGAACTCTTACATGTAATATCATGAACTTCAAGAAGTGTAGCATTGCTGGTGTGACCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'32-25,'32-24,33-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(15.4=100)
A:
NO
C2:
PF127102=HAD=PU(6.4=86.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTTGTACAACAATCTGATTCCT
R:
GGTCACACCAGCAATGCTACA
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types