RnoEX6051968 @ rn6
Exon Skipping
Gene
ENSRNOG00000008053 | Atp8a2
Description
ATPase phospholipid transporting 8A2 [Source:RGD Symbol;Acc:1594597]
Coordinates
chr15:40330221-40335509:-
Coord C1 exon
chr15:40335382-40335509
Coord A exon
chr15:40334606-40334683
Coord C2 exon
chr15:40330221-40330309
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCCTCCATTTTCCCTTTCAGGAC
3' ss Score
13.01
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACACGACCTCAGATAATTTCGGCTACAACCTACTGACGTTTATCATCTTGTACAACAATCTGATTCCTATCAGCCTGCTGGTGACACTCGAGGTCGTGAAGTACACGCAGGCCCTCTTCATAAACTGG
Seq A exon
GACACGGATATGTACTATATTGAAAATGACACTCCTGCCATGGCCAGGACATCAAACCTCAACGAAGAGCTTGGGCAG
Seq C2 exon
GTAAAATACCTGTTTTCTGACAAGACTGGAACTCTTACATGTAATATCATGAACTTCAAGAAGTGTAGCATTGCTGGTGTGACCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008053-'26-19,'26-18,27-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(15.3=100)
A:
PF0012215=E1-E2_ATPase=PD(0.1=0.0)
C2:
PF127102=HAD=PU(6.4=86.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTACAACCTACTGACGTT
R:
GCAATGCTACACTTCTTGAAGTTCA
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]