BtaEX0000771 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44239332-44241072:+
Coord C1 exon
chr22:44239332-44239466
Coord A exon
chr22:44240030-44240223
Coord C2 exon
chr22:44240941-44241072
Length
194 bp
Sequences
Splice sites
3' ss Seq
GAAAAATGCTTTGCTTTCAGTAT
3' ss Score
5.21
5' ss Seq
ACGGTAATT
5' ss Score
7.31
Exon sequences
Seq C1 exon
CTCATTGAGAATGCTAAACATAGAAAAGAAAATGAACTAATAGCAAAGAGAGAGAAACTGATTTTGGAAGTAGAAAAGGAATCACGGCGCATGGAAGAGTTTGCAGAATTTGCAGAATTGGACCGCATGCAACAG
Seq A exon
TATGTGACAGATGTAAGACAACTACAAAAACGTATTCAGGAATCTGAAGAAGCAGTTCAGTTTATTAATAAAGAAGAGGAACTTTTCAAATGGGAACTGACAAAATATCCCGAACTGGATAAATTAAAAGTTAACATTGAGCCCTATCAGAAGTTTTTTAATTTAGTTTTGAAGTGGCAACGAACAGAAAAACG
Seq C2 exon
GTGGATGGATGGAGGGTTTTTGGACCTTAATGGGGAAGCCATGGAAACTGATGTAGAGGAATTTTCCCGGGAAATTTTTAAGACTCTGAAATTTTTCCAAACAAAGCAAAAGAAGGAATTACAAGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(6.7=43.1)
C2:
PF083938=DHC_N2=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAATAGCAAAGAGAGAGAAACTGA
R:
TCTTGTAATTCCTTCTTTTGCTTTGT
Band lengths:
226-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development