DreEX6079809 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19621975-19623941:-
Coord C1 exon
chr23:19623807-19623941
Coord A exon
chr23:19622309-19622502
Coord C2 exon
chr23:19621975-19622218
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTTTTTATCTAGTAT
3' ss Score
8.64
5' ss Seq
GAAGTTTGT
5' ss Score
0.5
Exon sequences
Seq C1 exon
GTGATGGATGAAGCCAAGCTAAAGGGTCAAAATGATCTTTCTGGTCGAAGAGAAAAGCTGCTGCTGGAACTCGACAAAGTAGGCCGCAGGATGGAGGAATTTGCTGAGTGCTCTGAACTCGATATGATTCAACAG
Seq A exon
TATGCCGCTGATGTGAGAACAGTTCTGAAAAGACTTCAGGATATTGAAGAATCAATAGACTTTATCAACAAAGAAGAAGCCCTGTACCAATGGGAGAAAACCTCATACCCAGAGGTGGAGGTGATCAAGGAAAGCATTGAGCCTTATCAGAAGCTCTTCACCTTGGTTCTGAAATGGCAACGTACAAGAAAGAA
Seq C2 exon
ATGGATGGACGGCTCTTTCTTGGATTTGAACGGTGAGAGTATAGAGCTGGAGGTTGAGGAGTATGTTAGAGAGATGTACAAGATGCTGAAGTTCTTCCAGCAGAAACAGAAGAAGGCAGAGCTAAAGAAGGAGAAAACAGCAGGACTAAAGAAGAAGACCAAGGAGGATCAGGAAGATGACAAAAAGGAGAGTGCCACCATTCTCATTTGTTCCAGTGTTGTGAAGCAGGTTAAAGAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.180
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(6.3=43.1)
C2:
PF083938=DHC_N2=FE(18.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGATGGAGGAATTTGCT
R:
TGAGAATGGTGGCACTCTCCT
Band lengths:
257-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]