HsaEX6056765 @ hg19
Exon Skipping
Gene
ENSG00000174844 | DNAH12
Description
dynein, axonemal, heavy chain 12 [Source:HGNC Symbol;Acc:2943]
Coordinates
chr3:57454495-57457333:-
Coord C1 exon
chr3:57457199-57457333
Coord A exon
chr3:57456170-57456363
Coord C2 exon
chr3:57454495-57454706
Length
194 bp
Sequences
Splice sites
3' ss Seq
AAAAACTTATTTACTTTCAGTAT
3' ss Score
5.98
5' ss Seq
ACGGTAATT
5' ss Score
7.31
Exon sequences
Seq C1 exon
CTAATTGAGAATGCTAAACATAAAAAAGAAAATGAACTAATGGCCAAGAGAGAGAAACTTATTTTGGAAATAGAAAAAGAATCACGCCGCATGGAGGAGTTTACAGAATTTGCAGAGCTGGAGCGCATGCAACAG
Seq A exon
TATGTGACAGATGTAAGACAACTACAAAAACGTATTCAGGAATCTGAAGAAGCAGTGCAGTTTATTAATAAAGAAGAGGAACTTTTCAAGTGGGAATTGACAAAATATCCTGAACTGGATAAATTAAAAGTTAACATTGAGCCCTATCAGAAGTTTTTTAATTTTGTTTTGAAGTGGCAGCGATCAGAAAAACG
Seq C2 exon
GTGGATGGATGGAGGGTTTTTGGACCTCAATGGGGAAAGCATGGAGGCTGATGTGGAAGAGTTTTCCCGAGAAATTTTTAAGACACTAAAATTTTTCCAAACGAAGCTAAAGAAAGAATTACAAGAAAAAAGAAAGGCAGCAAGAAAACGGTCTTTGGAAGAAGAGAAAATTGAAGAAGAACCAAAAGACAATGCTACTATTACTATGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.134
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(6.7=43.1)
C2:
PF083938=DHC_N2=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTAATGGCCAAGAGAGAGA
R:
AGACCGTTTTCTTGCTGCCTT
Band lengths:
257-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)