RnoEX6054507 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2409151-2410363:+
Coord C1 exon
chr16:2409151-2409285
Coord A exon
chr16:2409593-2409786
Coord C2 exon
chr16:2410120-2410363
Length
194 bp
Sequences
Splice sites
3' ss Seq
GAACATTTGTTTGCTTTTAGTAT
3' ss Score
6.43
5' ss Seq
ACGGTAATT
5' ss Score
7.31
Exon sequences
Seq C1 exon
CTCATTGAGAATTCTAAACGTACGAAAGAAAATGAACTAATAGCCAAGAGAGAGAAACTGATTTTGGAAATAGAAAAAGAGTCGCGCCGCATGGAGGAGTTCACAGAGTTTGCAGAACTGGACCGCATGCAACAG
Seq A exon
TATGTGGCAGATGTAAGACATCTACAGAAACGTATTCAGGATTCGGAAGAAGCTGTCCAGTTTATTAATAAAGAAGAGGAACTTTTCAAATGGGAATTGACAAAGTATCCTGAACTGGAAAAATTAAAAGTCACCATTGAACCCTACCAGAAGTTTTTCAATTTTGTTCTGAAGTGGCAGCGAACAGAAAAACG
Seq C2 exon
GTGGATGGATGGAGGGTTTCTGGACCTTAACGGAGAAAGCATGGAAGCTGATATAGATGAGTTTTCCCGAGAAGTTTTTAAGACACTGAAGTTCTTCCAAACTAAGCAAAAGAAAGAATTACAAGAAAAAAGAAAGGCAGCAAGAAAGCGATCTTTGATGGAAGAGAAACCCGAAGAAGAACCAAAGGAGAGTCCTACAATTACAATGTGTGCTACAGTAATGGAGCAGATAAAGGTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.280
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(11.3=43.1)
C2:
PF083938=DHC_N2=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGAAAAAGAGTCGCGCCGC
R:
TCCTTTGGTTCTTCTTCGGGT
Band lengths:
255-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]