GgaEX1001313 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr12:8936524-8938416:-
Coord C1 exon
chr12:8938282-8938416
Coord A exon
chr12:8937461-8937654
Coord C2 exon
chr12:8936524-8936634
Length
194 bp
Sequences
Splice sites
3' ss Seq
GTTCAATTATTTAATTTCAGTAT
3' ss Score
4.28
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CTGATTGAAAAGTCCAAACGTAAAGGAGAACAAGAACTAATTTATAAATCTGAGAAACTGACAGTGGAATTAGGGAAGCTAACACAGTCTGTGACAGAACTTGAAGAATACTCAGAACTGGATTGCATGCAACAG
Seq A exon
TATGTAGCTGACCTGAGAGCCTTACAGAAACGCATACAGGAAGCTGATGAAACAGTAGCTTTTATTAATAAAGAAGAGACTCTGATGGAATGGAAGTTAAGTCACTTCCCACTTCTCAGCAGCTTAAAAAATGAGATTGAACCATATCAGAAACTCTTTCATCTCATACTGAAATGGCAGCGAACTGAAAAAAG
Seq C2 exon
ATGGATGGATGGTGAATTTTTGGAACTCAATGGAGAAATCATGGAGGCTGAGCTTGATGAGTTTTCTCGAGAGATATACAAAATGTCAAAACTCTTCCAACAAAAACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'13-16,'13-15,14-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(6.8=43.1)
C2:
PF083938=DHC_N2=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGAAAAGTCCAAACGTAAAGGA
R:
TGTTTTTGTTGGAAGAGTTTTGACA
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]