BtaEX0001118 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N096]
Coordinates
chr25:19729567-19755034:+
Coord C1 exon
chr25:19729567-19729721
Coord A exon
chr25:19754364-19754519
Coord C2 exon
chr25:19754824-19755034
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATTCTGGCTCCTCTTTCTAGGTA
3' ss Score
10.31
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GTCATTACCCTCCTACCAGAGGAGAGGTTTTTATTGATGGATATGACATCACAAAGAATATAACTGAAATTCGAGAAAATCTGGGCTTTTGCCCACAGGGCGACTTATTGTTTAATGACTTGACACTATCAGAACACCTTTTCTTCTACTCTATG
Seq A exon
GTAAAAAATATACATCAAAAGATGTCTTCTAATGAAATTAACCATATACTGTCTACTTTTGACCTGCTAGAAAAACGTGATACATTTTCAAAGTCACTGAGTGGAGGAACGAAGCGCAAACTCTCCATCATTATAGCACTTTTAGGGGGCTCCAAG
Seq C2 exon
GTAGTGATACTTGATGAACCATCATCTGGAATGGACCCATTCTCAAGGAGAGCCACCTGGGACATCCTTCAGCAATTTAAACATGATCGTACAATCTTACTGACCACTCACTACATGGATGAAGCTGACATCCTGGGTGACCGAATTGCCATCATGGTCAAGGGGACCCTGCAGTGCTGTGGCTCTTCAATCTTCCTGAAAAAAACATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035915-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
PF0000522=ABC_tran=FE(35.2=100)
C2:
PF0000522=ABC_tran=PD(5.5=11.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACAGGGCGACTTATTGTT
R:
ATTGAAGAGCCACAGCACTGC
Band lengths:
255-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development