GgaEX6013154 @ galGal3
Exon Skipping
Gene
ENSGALG00000001967 | E1BVQ5_CHICK
Description
NA
Coordinates
chr14:14343209-14344365:-
Coord C1 exon
chr14:14344211-14344365
Coord A exon
chr14:14343734-14343889
Coord C2 exon
chr14:14343209-14343419
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCCCTTGTGTGGCAGCTG
3' ss Score
8.8
5' ss Seq
AAGGCAAGC
5' ss Score
2.46
Exon sequences
Seq C1 exon
GTCTGTACTCCCCAACGAGTGGGCAGGCGTACATCAATGGCTACGAGATCTCTCAGGACATGGTTCTGATCCGCCGGAGCCTGGGGCTGTGTCCGCAGCACGACGTGCTCTTTGACAACATGACGGTGGAGGAGCACCTCCACTTCTATGCAGGG
Seq A exon
CTGAAGGGATACCCAGCCTCCAAGTGTCCTGAGGAGATCAACCATATCCTGCGGATCCTCAACCTGGAGGACAAGCGGCACTCTCTGACCAAGGCGCTCTCTGGTGGCATGAAGCGCAAGCTGTCCATTGGCATCGCCCTCATCGGGGACTCCAAG
Seq C2 exon
GTGGTGATGCTGGATGAGCCAACGTCGGGGATGGATCCAGCTTCTCGCAGGGCCACGTGGGACCTCCTCCAGCAGCAGAGGAGCAACCGTACCATCCTGCTGACCACGCACTTCATGGACGAGGCTGACTTGCTGGGGGACCGCATAGCTATCATGGCCAAGGGCGAGCTGCAGTGCTGCGGCTCCTCCCTCTTCCTCAAACGTAAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'14-15,'14-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.070
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
PF0000522=ABC_tran=FE(35.2=100)
C2:
PF0000522=ABC_tran=PD(5.5=11.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACGTGCTCTTTGACAACA
R:
TTTGAGGAAGAGGGAGGAGCC
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]