MmuEX6075639 @ mm10
Exon Skipping
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24385398-24386392:+
Coord C1 exon
chr17:24385398-24385552
Coord A exon
chr17:24385817-24385972
Coord C2 exon
chr17:24386182-24386392
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTCTCATTCCTGCCTTCCAGCTG
3' ss Score
10.4
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GCCTCTTCCCCCCTACCAGTGGACATGCTTATATTCATGGGTACGAAATTTCCCAAGACATGGCTCAGATCCGCAAGAGTTTGGGCCTGTGTCCCCAGCATGATGTACTGTTTGACAACCTGACAGTTGCCGAACATCTTTACTTCTATGCACAG
Seq A exon
CTGAAAGGCCTCTCTCTCCAGAAGTGTCCTGAGGAAGTCAAGCAGATGCTACACATCCTCAGCCTGGAGGACAAGCGTGACTTACGGTCCAAGTTCCTGAGTGGGGGCATGAAGCGCAAGCTCTCCATTGGCATCGCCCTCATAGCGGGCTCTAAG
Seq C2 exon
GTGCTGATGTTAGATGAGCCCACCTCAGGCATGGATGCAGTGTCCAGAAGGGCCATCTGGGACCTTCTCCAGCAGCAGAAGAGTGACCGCACCGTCCTGCTGACCACTCACTTCATGGACGAAGCTGACCTGCTGGGAGACCGCATCGCCATCTTGGCCAAGGGGGAGCTCCAGTGCTGCGGGTCTTCACTATTTCTCAAGCAGAAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-'28-42,'28-40,29-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
PF0000522=ABC_tran=FE(35.2=100)
C2:
PF0000522=ABC_tran=PD(5.5=11.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCTCAGATCCGCAAGAG
R:
CAAGATGGCGATGCGGTCTC
Band lengths:
253-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types