GgaEX6013154 @ galGal4
Exon Skipping
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13577826-13578982:-
Coord C1 exon
chr14:13578828-13578982
Coord A exon
chr14:13578351-13578506
Coord C2 exon
chr14:13577826-13578036
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCCCTTGTGTGGCAGCTG
3' ss Score
8.8
5' ss Seq
AAGGCAAGC
5' ss Score
2.46
Exon sequences
Seq C1 exon
GTCTGTACTCCCCAACGAGTGGGCAGGCGTACATCAATGGCTACGAGATCTCTCAGGACATGGTTCTGATCCGCCGGAGCCTGGGGCTGTGTCCGCAGCACGACGTGCTCTTTGACAACATGACGGTGGAGGAGCACCTCCACTTCTATGCAGGG
Seq A exon
CTGAAGGGATACCCAGCCTCCAAGTGTCCTGAGGAGATCAACCATATCCTGCGGATCCTCAACCTGGAGGACAAGCGGCACTCTCTGACCAAGGCGCTCTCTGGTGGCATGAAGCGCAAGCTGTCCATTGGCATCGCCCTCATCGGGGACTCCAAG
Seq C2 exon
GTGGTGATGCTGGATGAGCCAACGTCGGGGATGGATCCAGCTTCTCGCAGGGCCACGTGGGACCTCCTCCAGCAGCAGAGGAGCAACCGTACCATCCTGCTGACCACGCACTTCATGGACGAGGCTGACTTGCTGGGGGACCGCATAGCTATCATGGCCAAGGGCGAGCTGCAGTGCTGCGGCTCCTCCCTCTTCCTCAAACGTAAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'16-21,'16-19,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.070
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
PF0000522=ABC_tran=FE(35.2=100)
C2:
PF0000522=ABC_tran=PD(5.5=11.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACGTGCTCTTTGACAACA
R:
TTTGAGGAAGAGGGAGGAGCC
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]