DreEX6015425 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12504678-12507196:+
Coord C1 exon
chr3:12504678-12504832
Coord A exon
chr3:12506573-12506728
Coord C2 exon
chr3:12506986-12507196
Length
156 bp
Sequences
Splice sites
3' ss Seq
AGCTTCTTTCTTGTCTTCAGCTG
3' ss Score
8.01
5' ss Seq
AAGGTCAAT
5' ss Score
3.77
Exon sequences
Seq C1 exon
GTCTTTTCCCGCCCTCCAGCGGTCGTGCCTACATCAATGGATATGATATTTGTCAGGATATGGCTCTGATCCGCCGCAGTCTCGGTTTGTGTCCGCAGCATGACGTGCTCTTCGATAACCTCACCGTCAGAGAACACCTGCTCTTCTACACACAG
Seq A exon
CTGAAGGGTTACCCTCGCGAGAAGATCCCTGGAGAGGTGGACCGGATCATCCGCATCCTCAACCTTGAAGACAAGCGTAACGCCAAATGCAAGACTCTTTCTGGTGGCATGAAGAGAAAGCTTTCCATCGGCATTGCTTTAATTGGAGACTCAAAG
Seq C2 exon
GTGGTGATGTTGGACGAGCCCACCTCAGGAATGGACCCCTCAGCCCGTCGGGCCACCTGGGACCTGCTGCAGGGCGAGAAACGTGGCCGCACCATCCTGCTTACCACACACTTCATGGACGAGGCCGACCTGCTGGGAGATCGCATCGCCATCATGGCCAGCGGAGAGCTCCAGTGCTGCGGCTCGCCACTCTTCCTCAAGAACAAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
PF0000522=ABC_tran=FE(35.2=100)
C2:
PF0000522=ABC_tran=PD(5.5=11.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCGTGCCTACATCAATGG
R:
GTGTGGTAAGCAGGATGGTGC
Band lengths:
245-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]