MmuEX6013751 @ mm10
Exon Skipping
Gene
ENSMUSG00000051900 | Abca16
Description
ATP-binding cassette, sub-family A (ABC1), member 16 [Source:MGI Symbol;Acc:MGI:2388711]
Coordinates
chr7:120475421-120479699:+
Coord C1 exon
chr7:120475421-120475575
Coord A exon
chr7:120477214-120477369
Coord C2 exon
chr7:120477708-120479699
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGCTTCTCTTTCCAGGTA
3' ss Score
12.53
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTCGTTTTGCTGCTACCAGAGGAGAGGCCTATATTAATGGATATAACATTTCAGATAACATGATTGAAGTTAGAAAAGACTTGGGTTTCTGCCCACAACACGACCTATTGTTTGACGATTTGACATTATCAGAACACCTTTTTTTCTACTGTATG
Seq A exon
GTAAAAGGAATACCTCAAAACATAAACTGTGAGGAAATTGACCGTATGCTGTCAGCTTTTAACCTGCAAGAAAACTACCATACATTATCAGGTTCAGCGAGTGGAGGAGTGAGACGCAAACTCTCTATCGTTTTAGCACTTATGGCGGGCTCCAAG
Seq C2 exon
GTAGTGATACTTGATGAGCCATCATCCGGCATGGACCCAGTGTCAAGAAGAGCCACCTGGGATATCCTTCAGCATTATAAACACAATCGAACCATTTTACTGACCACCCACTACATGGATGAAGCTGACGTCCTGGGTGACCGTGTTGCCATCATGGTCAGGGGCACCTTGCACTGCTGTGGCTCTTCAGTCTTCCTGAAACAAATATATGGTCTCACTCCATTTGATCCTTCTTAGGATACCAATACTTTAATAATACTCTTCTAACATTACCTTCATTATATTTTTATTATATACCCAAAACTTAATGACCTTTCTCTATTCTGCAATTTTGGTCTCAATTATTATAAGTTTAAAACATTTTTTTCATTCCTTGAGATTTTCATATGTATTTTGATCACGGTTTTTTGCAATTTTACACAAAGTTGCTGACCCATTTTGTCCTTGCTGTCAATCTTTGTCTCTGTAATGTCTCCCTACATCCAGAAGGTTATTTGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051900-'16-25,'16-22,22-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(28.8=100)
A:
PF0000522=ABC_tran=FE(34.9=100)
C2:
PF0000522=ABC_tran=PD(5.5=11.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACAACACGACCTATTGT
R:
GACTGAAGAGCCACAGCAGTG
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types