RnoEX0004797 @ rn6
Exon Skipping
Gene
ENSRNOG00000015783 | Abca16
Description
ATP-binding cassette, subfamily A (ABC1), member 16 [Source:RGD Symbol;Acc:1563534]
Coordinates
chr1:190284873-190288245:+
Coord C1 exon
chr1:190284873-190285001
Coord A exon
chr1:190287549-190287704
Coord C2 exon
chr1:190288035-190288245
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATTCTGGCTTCTCTTAACAGATA
3' ss Score
9.64
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCCTATATTAATGGGTATAATATTTCAGATAACATGGCTGAAATTAGAAAAGACTTGGGCTTCTGCCCTCAACACGACCTATTGTTTGATGATTTGACACTATCAGAACATCTTTTTTTCTACTGTATG
Seq A exon
ATAAAAGGACACCCTCAAAACATAAATTGTGTGGAAATTAACCGTATGCTGTCTGTTTTTAACCTGCAAGAAAACTACCATACATTATCAGGCTCAGTGAGTGGAGGAGTGAGGCGCAAACTCTCCATCATTTTAGCACTTATGGGGGGCTCCAAG
Seq C2 exon
GTAGTGATACTTGACGAACCATCATCTGGCATGGACCCAATGTCAAGGAGGGCCACCTGGGATATCCTTCAGCATTATAAACAGAATCGGACCATCTTACTGACCACCCACTACATGGATGAAGCTGACGTCCTGGGTGACCGCATTGCCATCATGGTCAGGGGGACCTTGCACTGCTGTGGCTCTTCAGTATTCCTGAAACAAATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015783_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(28.8=100)
A:
PF0000522=ABC_tran=FE(34.9=100)
C2:
PF0000522=ABC_tran=PD(5.5=11.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCCCTCAACACGACCTA
R:
GAAGAGCCACAGCAGTGCAAG
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]