BtaEX0001151 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:78541791-78590234:-
Coord C1 exon
chr16:78590189-78590234
Coord A exon
chr16:78552318-78552437
Coord C2 exon
chr16:78541791-78541860
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTTCCGTTGCTGCATTTCAGAGC
3' ss Score
7.74
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGATCCGGAGGTGTTGTGGAAGTTCCCAGAGGACTTTGCAGACCAG
Seq A exon
AGCGTCTCGGAATCAGGTTGGACAGCACTTTGCCTTCGTGCTGACGGACATTGAGAGTAAACAGAGGTTTGGGTTCTGCCGACTCACCGCAGGAGGCAAGATCTGCTTATGCATCCTGAG
Seq C2 exon
TTACCTGCCATGGTTTGAAGTATATTACAAGCTTCTGAATACTCTGGCAGATTACTTGACTAAGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037661_MULTIEX1-2/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0345613=uDENN=PD(63.8=73.2),PF0214116=DENN=PU(4.4=19.5)
C2:
PF0214116=DENN=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGTGTTGTGGAAGTTCC
R:
CCTTAGTCAAGTAATCTGCCAGAGT
Band lengths:
106-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development