HsaEX0019107 @ hg38
Exon Skipping
Gene
ENSG00000213047 | DENND1B
Description
DENN domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr1:197658300-197674169:-
Coord C1 exon
chr1:197674120-197674169
Coord A exon
chr1:197672037-197672156
Coord C2 exon
chr1:197658300-197658369
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTAATGTTACTATATTTTAGGGT
3' ss Score
8.52
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GAAATACTACAGAGTGTGCCAAAGTTCTGTTTTCCCTTTGACGTTGAAAG
Seq A exon
GGTGTCTCAGAATCAAGTTGGACAGCACTTTACCTTTGTACTGACAGACATTGAAAGTAAACAGAGATTTGGATTCTGCAGACTGACGTCAGGAGGCACAATTTGTTTATGCATCCTTAG
Seq C2 exon
TTACCTTCCCTGGTTTGAAGTGTATTACAAGCTTCTAAATACTCTTGCAGATTACTTGGCTAAGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047_MULTIEX1-4/15=3-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(25.8=100)
A:
PF0345613=uDENN=PD(48.4=73.2),PF0214116=DENN=PU(3.9=17.1)
C2:
PF0214116=DENN=FE(12.8=100)
Main Skipping Isoform:
ENST00000620048fB13623
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAGAGTGTGCCAAAGTTCTG
R:
AGTTCCTTAGCCAAGTAATCTGCA
Band lengths:
114-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development