GgaEX0002795 @ galGal3
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2390531-2404279:+
Coord C1 exon
chr8:2390531-2390580
Coord A exon
chr8:2398500-2398619
Coord C2 exon
chr8:2404210-2404279
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTCTGTATCTAATTTTTCAGGGT
3' ss Score
9.98
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GAAGTGTTGAACAGCGTTCCAAAGTTCTGCTTTCCTTTTGACATCGAAAG
Seq A exon
GGTGTCCCAAAACCAAGTAGGACAGCATTTTACTTTTGTGCTCACCGACATTGAAAGTAAGCAACGGTTTGGATTTTGCCGTTTGACATCAGGAGGCAAAGTCTGCCTCTGTATTCTGAG
Seq C2 exon
TTATTTACCCTGGTTTGAAGTATACTATAAGCTTTTAAATACTCTGGCAGATTATTTGGCTAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0214116=DENN=PU(4.4=33.3)
C2:
PF0214116=DENN=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGTTGAACAGCGTTCCA
R:
GCTCTTTAGCCAAATAATCTGCCA
Band lengths:
118-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]