DreEX0026411 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23344676-23355514:+
Coord C1 exon
chr22:23344676-23344725
Coord A exon
chr22:23345639-23345758
Coord C2 exon
chr22:23355445-23355514
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTGGTGGCCTGCAGAGT
3' ss Score
6.97
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAGGTCCTGCAGACAGTGCCTAAGTTCTGCTTCCCATTTGACGTGGAAAG
Seq A exon
AGTTTCTCCGACTCAGGTGGGCCAGAACTTCACGTTTGTGCTCACAGACATTGAAAGCAAGCAGAGGTTTGGGTTCTGTCGGCTGACGTCCGGCTGCAAGCTCTGCATCTGCTTGCTCAG
Seq C2 exon
CTATCTCCCATGGTTTGAGATTTATTATAAGCTGCTAAATACCCTTGCAGACTACTTATCAAAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(25.8=100)
A:
PF0345613=uDENN=PD(48.4=73.2),PF0214116=DENN=PU(4.4=19.5)
C2:
PF0214116=DENN=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCTAAGTTCTGCTTCCC
R:
CTGGTGTTTTGATAAGTAGTCTGCA
Band lengths:
106-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]