GgaEX0002795 @ galGal4
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr8:2369642-2383390:+
Coord C1 exon
chr8:2369642-2369691
Coord A exon
chr8:2377611-2377730
Coord C2 exon
chr8:2383321-2383390
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTCTGTATCTAATTTTTCAGGGT
3' ss Score
9.98
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GAAGTGTTGAACAGCGTTCCAAAGTTCTGCTTTCCTTTTGACATCGAAAG
Seq A exon
GGTGTCCCAAAACCAAGTAGGACAGCATTTTACTTTTGTGCTCACCGACATTGAAAGTAAGCAACGGTTTGGATTTTGCCGTTTGACATCAGGAGGCAAAGTCTGCCTCTGTATTCTGAG
Seq C2 exon
TTATTTACCCTGGTTTGAAGTATACTATAAGCTTTTAAATACTCTGGCAGATTATTTGGCTAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(34.0=94.1)
A:
PF0345613=uDENN=PD(63.8=73.2),PF0214116=DENN=PU(4.0=19.5)
C2:
PF0214116=DENN=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGTTGAACAGCGTTCCA
R:
GCTCTTTAGCCAAATAATCTGCCA
Band lengths:
118-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]