Special

BtaEX0001222 @ bosTau6

Exon Skipping

Description
Bos taurus zinc finger protein LOC100124497 (LOC100124497), mRNA. [Source:RefSeq mRNA;Acc:NM_001102541]
Coordinates
chr18:65132596-65160002:-
Coord C1 exon
chr18:65159771-65160002
Coord A exon
chr18:65158567-65158693
Coord C2 exon
chr18:65132596-65136113
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTCGTGTTATACCAGGGC
3' ss Score
5.81
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GACATTTTGGTCGCTACTGAGACTGTGGAGCTAGGCAGAAACTCCGGAGTGTGTTGTTGGAGAGGGAGATGAGGGGCTGAGGCGTAGTTGGAAGCTTTGTTCGTACTACGCAGGGTTGCAGACGTCGCCGTAGGCCGAGAATAACCGTGCCGAGTCCGACTCGGTTGTTCGAGTGTTGTCGCTCCGCCCACAGGCTACGATGGCCGCGGCTGCGCTGTCGGCCCCACATCAG
Seq A exon
GGCAGTGTGACCTTTGAGGATGTGGCCATGTACTTCTCCTGGGAGGAATGGTGTCTTCTTGATGAGGCTCAGATACAGCTGTACCTGGATGTCATGCTGGAGAACTTTGCACTTGTATGCATGCTGG
Seq C2 exon
GTTCTTGGCGTGGAGTCCAGGATAAAGAGACACCATCTGAAGAAATCAAACCTGCAGGGGTGTTACAGTTTCGCACTCCCAGGGCAGGTTTGTCTCCTGAGAAGACCCAACCCTGTGCGATGTGCATCCCAGTCTTGAGAGACATTTTGCACTTGGCTGAAGAGCAAGGAACAAATGGGGAGCAGAAAGCATACACATGTGCAGCCTGTGGGAAGGCGTTCTATTTCACTGCTAACATTCAGCAGCACCAGAAGCAGCACGTTAGAGAGAATCCTTTCCTATGTAATACTGAGCGACCCTCATTTTTAAAGACCTGCACAGTTCACTCAGCAGGGAATTTCTCTACCTACATGGAGATTGGGAATGACTTCATGGCCAGCATGGGAGTTCAGCCACAGGCCACTAATACTGGGAAGAAACTGAACAACAGTACCGAGTGTGAGGTTGTTTTTCACAGTGGAGAAAGTCATCACAGTTTGGGAGAAGGTAAGATAGTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038635-'0-5,'0-0,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):

C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTTGTTCGAGTGTTGTCG
R:
GCTCCCCATTTGTTCCTTGCT
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development