BtaEX0001325 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11409227-11412185:+
Coord C1 exon
chr13:11409227-11409306
Coord A exon
chr13:11411441-11411539
Coord C2 exon
chr13:11412157-11412185
Length
99 bp
Sequences
Splice sites
3' ss Seq
TAGTATACATTATTTCCTAGATG
3' ss Score
5.24
5' ss Seq
TGGATATGG
5' ss Score
-1.95
Exon sequences
Seq C1 exon
CCTTCCAGAGAAGTCTGTGGATTGTTTGTCTGGAGCTGCTGGTCCAAGAGGAAAAAAGATGTTAAATGGACAAGTAGAAG
Seq A exon
ATGTGTCTTAAATACCTTCTTCCGTGAGTGGATCGAGAAACTTTAAGATGGCCCAACTAGAGGAGCCAAGACATGTAGACATACCAGTAGCCCACATGG
Seq C2 exon
ATTCTCCTGGGAAATATCCTAATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-15/38=14-16
Average complexity
C1
Mappability confidence:
86%=100=93%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSBTAT00000008040fB218
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAAGTCTGTGGATTGTTTGT
R:
TTCACATTAGGATATTTCCCAGGAGA
Band lengths:
103-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development