BtaEX0001326 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11409227-11433154:+
Coord C1 exon
chr13:11409227-11409306
Coord A exon
chr13:11412157-11412185
Coord C2 exon
chr13:11432944-11433154
Length
29 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCTTTTGCCTTTTAGATT
3' ss Score
11.23
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CCTTCCAGAGAAGTCTGTGGATTGTTTGTCTGGAGCTGCTGGTCCAAGAGGAAAAAAGATGTTAAATGGACAAGTAGAAG
Seq A exon
ATTCTCCTGGGAAATATCCTAATGTGAAG
Seq C2 exon
ATTCTGTTAGCTTGTTGAAAATTCAAGATACAATTCTTTCACGTGAAAGATTAGTAGGTTTTCAAAGAAGCCATTGTGAACTACTTAGAGAATTTTACAGAATGAAAAGTAAGGTTCGTGGGCTACAGAAAGAGCTGTCAGAAACCAAAGAAGTAAAGTCACAGTTAGAGCATCAGAAAGTGGAGTGGGAACGAGAGCTCGGCAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-16/38=14-25
Average complexity
C2
Mappability confidence:
86%=100=93%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCTGGTCCAAGAGGA
R:
TCACAATGGCTTCTTTGAAAACCT
Band lengths:
127-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development