BtaEX0001330 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11422584-11433154:+
Coord C1 exon
chr13:11422584-11422630
Coord A exon
chr13:11425817-11425965
Coord C2 exon
chr13:11432944-11433154
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTGTCAAACTTTCACTAAAGGTT
3' ss Score
5.55
5' ss Seq
TAGGTAATC
5' ss Score
5.91
Exon sequences
Seq C1 exon
AGGAAGCACAGGAAAAACCTGATGGAGATGAAAATAACCATTCGCAG
Seq A exon
GTTCAAGAAAAGAAGCACAAAAGTAGTGAAGTGGAAGTATCAGACAACGAATGTGATGCTGCTGCTGAGAGTGGATTGATTCAGCAGAGAAAGAGTGGAAGAAACAGCAGCCAGGAGTTTCCTGCTGCGGAGAATGAAGATTTTGATAG
Seq C2 exon
ATTCTGTTAGCTTGTTGAAAATTCAAGATACAATTCTTTCACGTGAAAGATTAGTAGGTTTTCAAAGAAGCCATTGTGAACTACTTAGAGAATTTTACAGAATGAAAAGTAAGGTTCGTGGGCTACAGAAAGAGCTGTCAGAAACCAAAGAAGTAAAGTCACAGTTAGAGCATCAGAAAGTGGAGTGGGAACGAGAGCTCGGCAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-20/38=19-25
Average complexity
C3
Mappability confidence:
84%=100=87%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.444 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAAACCTGATGGAGATGAAA
R:
GCTCTCGTTCCCACTCCACTT
Band lengths:
235-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development