BtaEX0001329 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11418689-11433154:+
Coord C1 exon
chr13:11418689-11418937
Coord A exon
chr13:11422548-11422630
Coord C2 exon
chr13:11432944-11433154
Length
83 bp
Sequences
Splice sites
3' ss Seq
AATTTTAACTAAACATACAGATT
3' ss Score
2.99
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATTTGGCTTCTACTGCTTTGAGCCTCAGTCTCGAGACTTGTCAGAGAGCTGGGCGTTTGAAAGTTGGTGATCAGTGTCCATCGATGTCACAGTCAATGACCAAAAATCAGTCAGCATCCACAGAATTGGGACAGATGACCGTAACAGATGAAGTAAAGAGGAATATTGCAGTGATGTTTCTGGTAGGGAATTCCACGCTCCATGACCCGTGCCAGTCTCAGCTGCCAGAAAACAGAGAAAGCCAACAAG
Seq A exon
ATTTGTCAGCAGAACTAGACTTGGAAATGATATCAGAGGAAGCACAGGAAAAACCTGATGGAGATGAAAATAACCATTCGCAG
Seq C2 exon
ATTCTGTTAGCTTGTTGAAAATTCAAGATACAATTCTTTCACGTGAAAGATTAGTAGGTTTTCAAAGAAGCCATTGTGAACTACTTAGAGAATTTTACAGAATGAAAAGTAAGGTTCGTGGGCTACAGAAAGAGCTGTCAGAAACCAAAGAAGTAAAGTCACAGTTAGAGCATCAGAAAGTGGAGTGGGAACGAGAGCTCGGCAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-19/38=18-25
Average complexity
C3*
Mappability confidence:
85%=100=92%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.014
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCTCAGCTGCCAGAAAA
R:
CAGCTCTTTCTGTAGCCCACG
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development