BtaEX0001327 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11412157-11433154:+
Coord C1 exon
chr13:11412157-11412185
Coord A exon
chr13:11412280-11412352
Coord C2 exon
chr13:11432944-11433154
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCCAAACCCATTCAGCCT
3' ss Score
4.12
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATTCTCCTGGGAAATATCCTAATGTGAAG
Seq A exon
CCTGCAGTCTTAGTGAAAGACTCTGTTCCTAGTAAAACAGTCGGAATGAAGGATTTACAAACATCCAGTTCAG
Seq C2 exon
ATTCTGTTAGCTTGTTGAAAATTCAAGATACAATTCTTTCACGTGAAAGATTAGTAGGTTTTCAAAGAAGCCATTGTGAACTACTTAGAGAATTTTACAGAATGAAAAGTAAGGTTCGTGGGCTACAGAAAGAGCTGTCAGAAACCAAAGAAGTAAAGTCACAGTTAGAGCATCAGAAAGTGGAGTGGGAACGAGAGCTCGGCAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-17/38=16-25
Average complexity
C2
Mappability confidence:
86%=100=93%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.960 C2=0.014
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGGGAAATATCCTAATGTGA
R:
TGACAGCTCTTTCTGTAGCCC
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development