BtaEX0001332 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11426242-11433154:+
Coord C1 exon
chr13:11426242-11426301
Coord A exon
chr13:11427415-11427573
Coord C2 exon
chr13:11432944-11433154
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGTGAATTTTTTAAAAGTAGCTA
3' ss Score
0.76
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TCTGAGGACTTCCTTCAGCGTTTCTCATGAGGCGGGACTAGTGGTGATGAACTCCCTCAG
Seq A exon
CTACCCTGGTGTGCACAGGAAGGAAGTAAAGAAAAAGAACAACGCCAAACGGACACCAGAAGGCTGTGTCATTGCACCGATATTTGAAAAGCCCGATTCACTGACTGGTGGTCTGCTGCACGTGAATGATGAAAACAAAGTGAATCAGGATGATGACAG
Seq C2 exon
ATTCTGTTAGCTTGTTGAAAATTCAAGATACAATTCTTTCACGTGAAAGATTAGTAGGTTTTCAAAGAAGCCATTGTGAACTACTTAGAGAATTTTACAGAATGAAAAGTAAGGTTCGTGGGCTACAGAAAGAGCTGTCAGAAACCAAAGAAGTAAAGTCACAGTTAGAGCATCAGAAAGTGGAGTGGGAACGAGAGCTCGGCAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-22/38=21-25
Average complexity
C3*
Mappability confidence:
82%=97=84%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCGTTTCTCATGAGGCG
R:
TCTCGTTCCCACTCCACTTTCT
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development