BtaEX0001331 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11425726-11433154:+
Coord C1 exon
chr13:11425726-11425965
Coord A exon
chr13:11426242-11426301
Coord C2 exon
chr13:11432944-11433154
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGAGCATCCTTTCATTTCAGTCT
3' ss Score
6.28
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GGCAAACGCTGAAGCAAATAATAAAATTGAAAACAAAGATCTTTATAATAAAGAAGTAGCAATTATTCTTAGTGTCAAACTTTCACTAAAGGTTCAAGAAAAGAAGCACAAAAGTAGTGAAGTGGAAGTATCAGACAACGAATGTGATGCTGCTGCTGAGAGTGGATTGATTCAGCAGAGAAAGAGTGGAAGAAACAGCAGCCAGGAGTTTCCTGCTGCGGAGAATGAAGATTTTGATAG
Seq A exon
TCTGAGGACTTCCTTCAGCGTTTCTCATGAGGCGGGACTAGTGGTGATGAACTCCCTCAG
Seq C2 exon
ATTCTGTTAGCTTGTTGAAAATTCAAGATACAATTCTTTCACGTGAAAGATTAGTAGGTTTTCAAAGAAGCCATTGTGAACTACTTAGAGAATTTTACAGAATGAAAAGTAAGGTTCGTGGGCTACAGAAAGAGCTGTCAGAAACCAAAGAAGTAAAGTCACAGTTAGAGCATCAGAAAGTGGAGTGGGAACGAGAGCTCGGCAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-21/38=20-25
Average complexity
C3
Mappability confidence:
84%=100=91%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000008040fB218
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAAGAAACAGCAGCCAG
R:
TCACAATGGCTTCTTTGAAAACCT
Band lengths:
135-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development