BtaEX0001328 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11412280-11433154:+
Coord C1 exon
chr13:11412280-11412352
Coord A exon
chr13:11418689-11418937
Coord C2 exon
chr13:11432944-11433154
Length
249 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCACGTTTTTCAGATT
3' ss Score
9.8
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CCTGCAGTCTTAGTGAAAGACTCTGTTCCTAGTAAAACAGTCGGAATGAAGGATTTACAAACATCCAGTTCAG
Seq A exon
ATTTGGCTTCTACTGCTTTGAGCCTCAGTCTCGAGACTTGTCAGAGAGCTGGGCGTTTGAAAGTTGGTGATCAGTGTCCATCGATGTCACAGTCAATGACCAAAAATCAGTCAGCATCCACAGAATTGGGACAGATGACCGTAACAGATGAAGTAAAGAGGAATATTGCAGTGATGTTTCTGGTAGGGAATTCCACGCTCCATGACCCGTGCCAGTCTCAGCTGCCAGAAAACAGAGAAAGCCAACAAG
Seq C2 exon
ATTCTGTTAGCTTGTTGAAAATTCAAGATACAATTCTTTCACGTGAAAGATTAGTAGGTTTTCAAAGAAGCCATTGTGAACTACTTAGAGAATTTTACAGAATGAAAAGTAAGGTTCGTGGGCTACAGAAAGAGCTGTCAGAAACCAAAGAAGTAAAGTCACAGTTAGAGCATCAGAAAGTGGAGTGGGAACGAGAGCTCGGCAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-18/38=17-25
Average complexity
C3
Mappability confidence:
86%=100=92%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAGTGAAAGACTCTGTTCCTAGT
R:
TCTCGTTCCCACTCCACTTTCT
Band lengths:
262-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development