BtaEX0001338 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11448308-11452848:+
Coord C1 exon
chr13:11448308-11448475
Coord A exon
chr13:11450481-11450514
Coord C2 exon
chr13:11452626-11452848
Length
34 bp
Sequences
Splice sites
3' ss Seq
AGAATCATTTGTTCTTTTAGGCC
3' ss Score
7.92
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
CGATCCTGGTGTACATAGGAAGGAAGTAAAGAAAAAGAACGATGACAAATGGACACCGGAAGAACATGTGATGGCACCAATATTTGAAAAGACCGATTCACTGACTGGTGGTCTGCTGCACGTGAATGATGACGGCATTTTAAGGGAAGTGGATCAGGGTGATGACAG
Seq A exon
GCCTGCAAGGAAAACACCGTATGAAAAGAAGAAG
Seq C2 exon
ATTCTGTTGGCTTGTTGAAAATTCAAGATACAGTTCTTTCGCATGAAAGATTAGTAGGTTTTCAAAGAAGCCAAAGAAGCCATTGTGAACTACTTAGAGGAGAATTTTACAGAATGAAAAGTAAGGTTCGTGGGCTACAGAAAGAGCTGTCAGAAACCAAAGAAGTGAAATCACAGTTAGAGCATCAGAAAGTGGAGTGGGAAAGAGAGCTCGGCAACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-31/38=30-33
Average complexity
C2
Mappability confidence:
81%=94=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGAAGTGGATCAGGGTGA
R:
TCACAATGGCTTCTTTGGCTTCT
Band lengths:
115-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development