BtaEX0001365 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MGB9]
Coordinates
chr26:18363030-18379879:-
Coord C1 exon
chr26:18379653-18379879
Coord A exon
chr26:18377633-18377719
Coord C2 exon
chr26:18363030-18363095
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTGCTCTAAATAGGCC
3' ss Score
10.78
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATTTGATGCAGTTTGATGATAAAGGAAACAAGACCAGTGTACCAGATAAGGAACGGCAAATCGAGGCTCTTCAGTTGCTCTTCCTCATACTCCCTCCACCCAATCGTAACTTGCTGAAGTTACTGCTTGATCTCCTGTACCAGACAGCAAAGAAACAAGACAAGAATAAGATGTCCGCCTATAACCTTGCCCTTATGTTTGCACCTCATGTCTTATGGCCCAAAAAT
Seq A exon
GCCACTGCAAATGACCTTCAAGAGAATATCACAAAATTAAATGATGGGATGGCTTTTATGATTAAACACTCTCAGAAACTTTTTAAG
Seq C2 exon
GCTCCTGCTTATATTCGGGAATGTGCCAGATTGCACTATTTGGGTTCCAGAACTCAAGCATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040427-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(46.0=100)
A:
PF0062022=RhoGAP=PD(2.5=13.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATACTCCCTCCACCCAA
R:
GCAATCTGGCACATTCCCGAA
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development