RnoEX0010962 @ rn6
Exon Skipping
Gene
ENSRNOG00000048166 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:RGD Symbol;Acc:1593044]
Coordinates
chr1:261028797-261031221:-
Coord C1 exon
chr1:261030995-261031221
Coord A exon
chr1:261030138-261030224
Coord C2 exon
chr1:261028797-261028862
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTTCTCTTTCCACTGACTAGGTC
3' ss Score
6.95
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATCTGATGCAGTTTGATGATAAAGGAAATAAGACTAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTAATCCTCCCTCCAGCCAATCGGAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAAACAGCGAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCGCCCCATGTCCTGTGGCCCAAAAAT
Seq A exon
GTCACTGCAAATGACCTTCAGGAGAATATCACGAAGTTAAACACGGGGATGGCTTTTATGATCAAACACTCTCAGAAACTCTTTAAG
Seq C2 exon
GCCCCTGCTTATATTCGGGAATGTGCCAGATTGTACTATTTGGGCTCCAGAACTCAAGTGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048166-'14-10,'14-9,15-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(46.0=100)
A:
PF0062022=RhoGAP=PD(2.5=13.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAATCCTCCCTCCAGCCAA
R:
ACAATCTGGCACATTCCCGAA
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]