DreEX6099801 @ danRer10
Exon Skipping
Gene
ENSDARG00000083189 | arhgap19
Description
Rho GTPase activating protein 19 [Source:ZFIN;Acc:ZDB-GENE-100922-157]
Coordinates
chr22:34988436-34990942:-
Coord C1 exon
chr22:34990716-34990942
Coord A exon
chr22:34990546-34990632
Coord C2 exon
chr22:34988436-34988501
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTGTCTTTCTTCAGATG
3' ss Score
12.36
5' ss Seq
AGGGTATCT
5' ss Score
3.45
Exon sequences
Seq C1 exon
AACTGACCACGTTTGACGATGAAGGCAACAAGACGAGTTTTCCGGATAAGGAGCGTCAGATCGAGGCTCTGCAGCTCCTCCTCCTGCTTCTTCCCACCGCCAACCGAACACTCCTCAAGCTGCTGCTGGACCTGCTCTACCACACCGCCAAACAGCAGGACAAAAACAAGATGTCTGCTCACAACCTGGCGCTCATGTTCGGCCCGCACGTCATCTGGCCCAAGAAT
Seq A exon
ATGAATGCCAGTGACCTTCAGGAGAACCTGAAGAAGCTCAACAGCGGGATGGCGTTTCTCATCAAACACTCACAGAAGATCTTTAGG
Seq C2 exon
GCTCCAGCGTATCTGAGAGAACATGCCAGACTCCAGTTCGCAAACACCAAAATCCTTCAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000083189-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(46.0=100)
A:
PF0062022=RhoGAP=PD(2.5=13.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGAACACTCCTCAAGCTG
R:
TGGTGTTTGCGAACTGGAGTC
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]