MmuEX6032855 @ mm10
Exon Skipping
Gene
ENSMUSG00000025154 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:MGI Symbol;Acc:MGI:1918335]
Coordinates
chr19:41782331-41784998:-
Coord C1 exon
chr19:41784772-41784998
Coord A exon
chr19:41784326-41784412
Coord C2 exon
chr19:41782331-41782396
Length
87 bp
Sequences
Splice sites
3' ss Seq
GGTCTCTTTCCACTGACTAGGTC
3' ss Score
5.64
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATCTGATGCAGTTTGATGATAAAGGAAATAAGACCAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAGACAGCGAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCAAAAAT
Seq A exon
GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG
Seq C2 exon
GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025154_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(46.0=100)
A:
PF0062022=RhoGAP=PD(2.5=13.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCTGCTCTTCCTCATC
R:
TTCGCGAATATAAGCAGGAGC
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types