GgaEX1008754 @ galGal3
Exon Skipping
Gene
ENSGALG00000007609 | ARHGAP19
Description
NA
Coordinates
chr6:23797641-23799160:+
Coord C1 exon
chr6:23797641-23797867
Coord A exon
chr6:23798108-23798194
Coord C2 exon
chr6:23799095-23799160
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTGTCCTCTTGCCAGGTG
3' ss Score
11.34
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
ACTTGATGCTGTTTGATGAGAAGGGGAATAAGACCAGCACTCCAGACAAAGAGCGCCAAATCGAAGCCCTCCAGCTGCTCTTCCTGATCCTCCCTGCGCCCAACCGCAGCCTGCTCAAACTGCTGCTGGATTTGCTCTACCAGACCGCCAAGAAGCAGGACAAGAACAAGATGTCTGCCCACAATCTCGCCCTCATGTTTGCACCCCACATCCTATGGCCCAGAAAT
Seq A exon
GTGACAGCAAATGACCTGCAAGAGAATATCACAAAGCTAAACAACGGAGTGACCTTCATGATCAAACACTCGCAGAAACTCTTCAAG
Seq C2 exon
GCCCCAGCTTACATCAGGGAGTGTGCCAGGCTGCATTACCTGGGATCCAGAGCCCACACATCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007609-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(46.0=100)
A:
PF0062022=RhoGAP=PD(2.5=13.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTTCCTGATCCTCCCTG
R:
GGCACACTCCCTGATGTAAGC
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]