HsaEX0005435 @ hg38
Exon Skipping
Gene
ENSG00000213390 | ARHGAP19
Description
Rho GTPase activating protein 19 [Source:HGNC Symbol;Acc:HGNC:23724]
Coordinates
chr10:97246272-97259628:-
Coord C1 exon
chr10:97259402-97259628
Coord A exon
chr10:97256318-97256404
Coord C2 exon
chr10:97246272-97246337
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTCCTCTGAATAGGTC
3' ss Score
10.63
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATTTGATGCAGTTTGATGATAAAGGAAACAAGACCAATATACCAGACAAGGACCGGCAAATTGAGGCTCTCCAGTTGCTCTTCCTCATTCTCCCTCCTCCTAATCGTAATTTGCTGAAGTTATTGCTTGATCTCCTATACCAGACAGCAAAGAAACAAGACAAGAACAAGATGTCAGCCTATAACCTTGCCCTTATGTTTGCACCCCATGTCCTGTGGCCAAAAAAT
Seq A exon
GTCACTGCAAATGACCTTCAGGAGAATATCACAAAGTTAAACAGTGGGATGGCTTTTATGATTAAACACTCCCAGAAACTTTTTAAG
Seq C2 exon
GCTCCTGCTTACATTCGGGAGTGTGCGAGATTGCACTATTTGGGATCCAGAACTCAGGCATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213390_MULTIEX2-4/6=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(46.6=100)
A:
PF0062022=RhoGAP=PD(2.5=13.8)
C2:
PF0062022=RhoGAP=PD(1.2=9.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCCAGTTGCTCTTCCTC
R:
CTCCCGAATGTAAGCAGGAGC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development