HsaEX6089789 @ hg38
Exon Skipping
Gene
ENSG00000213390 | ARHGAP19
Description
Rho GTPase activating protein 19 [Source:HGNC Symbol;Acc:HGNC:23724]
Coordinates
chr10:97246272-97263629:-
Coord C1 exon
chr10:97263420-97263629
Coord A exon
chr10:97259402-97259628
Coord C2 exon
chr10:97246272-97246337
Length
227 bp
Sequences
Splice sites
3' ss Seq
AATTCTCTTTTGTCCTCAAGATT
3' ss Score
5.41
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
ACTTGCGAGTAGAGGGTTTGTTTAGAGTACCGGGTAATAGTGTCCGACAGCAGATTTTAAGGGATGCTCTCAATAATGGAACTGACATTGACTTGGAATCAGGGGAATTTCACTCAAATGATGTTGCCACTTTGCTGAAGATGTTTCTAGGAGAGTTGCCGGAGCCTCTGCTGACACATAAACACTTCAATGCACACCTCAAAATCGCTG
Seq A exon
ATTTGATGCAGTTTGATGATAAAGGAAACAAGACCAATATACCAGACAAGGACCGGCAAATTGAGGCTCTCCAGTTGCTCTTCCTCATTCTCCCTCCTCCTAATCGTAATTTGCTGAAGTTATTGCTTGATCTCCTATACCAGACAGCAAAGAAACAAGACAAGAACAAGATGTCAGCCTATAACCTTGCCCTTATGTTTGCACCCCATGTCCTGTGGCCAAAAAAT
Seq C2 exon
GCTCCTGCTTACATTCGGGAGTGTGCGAGATTGCACTATTTGGGATCCAGAACTCAGGCATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213390_MULTIEX2-2/6=1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(43.5=100)
A:
PF0062022=RhoGAP=FE(46.6=100)
C2:
PF0062022=RhoGAP=PD(1.2=9.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCGAGTAGAGGGTTTGT
R:
CTTTGATGCCTGAGTTCTGGA
Band lengths:
276-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains