BtaEX6100023 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MGB9]
Coordinates
chr26:18377633-18383195:-
Coord C1 exon
chr26:18382986-18383195
Coord A exon
chr26:18379653-18379879
Coord C2 exon
chr26:18377633-18377719
Length
227 bp
Sequences
Splice sites
3' ss Seq
TCATCTCTTTTATCCTCAAGATT
3' ss Score
5.83
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ACTTACGAGTAGAGGGTTTGTTTAGAGTACCAGGGAATAGTGTCCGACAGCAGATTTTAAGAGATGCTCTCAATAATGGAACTGATATTGACTTGGAATCAGGGGAGTTTCACTCAAATGATGTTGCTACCTTGCTGAAGATGTTTCTAGGAGAGTTACCTGAGCCCCTGCTGACACATAAACATTTTCACGCACACCTCAAAATTGCTG
Seq A exon
ATTTGATGCAGTTTGATGATAAAGGAAACAAGACCAGTGTACCAGATAAGGAACGGCAAATCGAGGCTCTTCAGTTGCTCTTCCTCATACTCCCTCCACCCAATCGTAACTTGCTGAAGTTACTGCTTGATCTCCTGTACCAGACAGCAAAGAAACAAGACAAGAATAAGATGTCCGCCTATAACCTTGCCCTTATGTTTGCACCTCATGTCTTATGGCCCAAAAAT
Seq C2 exon
GCCACTGCAAATGACCTTCAAGAGAATATCACAAAATTAAATGATGGGATGGCTTTTATGATTAAACACTCTCAGAAACTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040427-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.079 C2=0.034
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(42.9=100)
A:
PF0062022=RhoGAP=FE(46.0=100)
C2:
PF0062022=RhoGAP=PD(2.5=13.8)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTACGAGTAGAGGGTTTGTTT
R:
TGAGAGTGTTTAATCATAAAAGCCA
Band lengths:
284-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]