GgaEX1008758 @ galGal3
Exon Skipping
Gene
ENSGALG00000007609 | ARHGAP19
Description
NA
Coordinates
chr6:23796879-23798194:+
Coord C1 exon
chr6:23796879-23797088
Coord A exon
chr6:23797641-23797867
Coord C2 exon
chr6:23798108-23798194
Length
227 bp
Sequences
Splice sites
3' ss Seq
TCAGCTCTGTGATTTGGCAGACT
3' ss Score
4.67
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
ATCTCCGAGCAGAAGGTTTGTTTCGGGTGCCAGGCAACAGCATCAGGCAACAGATCCTAAAGGATGCTCTGAACAGTGGTACAGATATTGACCTGGACTCCGGGGAGTTTCATTCCAATGATGTGGCCACCTTGCTTAAGATGTTCCTGGGTGAATTACCAGAGCCCCTGCTGACACACAAGCACTTCCACGCCCACCTCAAAATTGCAG
Seq A exon
ACTTGATGCTGTTTGATGAGAAGGGGAATAAGACCAGCACTCCAGACAAAGAGCGCCAAATCGAAGCCCTCCAGCTGCTCTTCCTGATCCTCCCTGCGCCCAACCGCAGCCTGCTCAAACTGCTGCTGGATTTGCTCTACCAGACCGCCAAGAAGCAGGACAAGAACAAGATGTCTGCCCACAATCTCGCCCTCATGTTTGCACCCCACATCCTATGGCCCAGAAAT
Seq C2 exon
GTGACAGCAAATGACCTGCAAGAGAATATCACAAAGCTAAACAACGGAGTGACCTTCATGATCAAACACTCGCAGAAACTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007609-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.066 C2=0.034
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(42.9=100)
A:
PF0062022=RhoGAP=FE(46.0=100)
C2:
PF0062022=RhoGAP=PD(2.5=13.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGAAGGTTTGTTTCGG
R:
CTTGAAGAGTTTCTGCGAGTGT
Band lengths:
292-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]