DreEX6099800 @ danRer10
Exon Skipping
Gene
ENSDARG00000083189 | arhgap19
Description
Rho GTPase activating protein 19 [Source:ZFIN;Acc:ZDB-GENE-100922-157]
Coordinates
chr22:34990546-34994047:-
Coord C1 exon
chr22:34993838-34994047
Coord A exon
chr22:34990716-34990942
Coord C2 exon
chr22:34990546-34990632
Length
227 bp
Sequences
Splice sites
3' ss Seq
TCTTTATTAACTCTCCACAGAAC
3' ss Score
9.44
5' ss Seq
AATGTACGC
5' ss Score
4.52
Exon sequences
Seq C1 exon
ATCTCCATGTGCAGGGTCTGTTTCGAGTTCCTGGGAACAGTCTGAGGCAGCAGACGCTGAGAGAGCAGCTCAACAGTGGAGCCGATATTGACTTCGCCGCTGGTGACTTTCATCCCAATGACGTGGCCACGCTCCTCAAGAGTTTCTTGGGAGAATTGCCTGAGCCCCTGCTGACCCACCGCCACCTGCACGCCCACCTGAAGATCACAG
Seq A exon
AACTGACCACGTTTGACGATGAAGGCAACAAGACGAGTTTTCCGGATAAGGAGCGTCAGATCGAGGCTCTGCAGCTCCTCCTCCTGCTTCTTCCCACCGCCAACCGAACACTCCTCAAGCTGCTGCTGGACCTGCTCTACCACACCGCCAAACAGCAGGACAAAAACAAGATGTCTGCTCACAACCTGGCGCTCATGTTCGGCCCGCACGTCATCTGGCCCAAGAAT
Seq C2 exon
ATGAATGCCAGTGACCTTCAGGAGAACCTGAAGAAGCTCAACAGCGGGATGGCGTTTCTCATCAAACACTCACAGAAGATCTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000083189-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.079 C2=0.034
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(42.9=100)
A:
PF0062022=RhoGAP=FE(46.0=100)
C2:
PF0062022=RhoGAP=PD(2.5=13.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCATGTGCAGGGTCTGT
R:
AGATCTTCTGTGAGTGTTTGATGAGA
Band lengths:
292-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]