MmuEX6032854 @ mm10
Exon Skipping
Gene
ENSMUSG00000025154 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:MGI Symbol;Acc:MGI:1918335]
Coordinates
chr19:41784326-41786767:-
Coord C1 exon
chr19:41786558-41786767
Coord A exon
chr19:41784772-41784998
Coord C2 exon
chr19:41784326-41784412
Length
227 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTGTTTTCCAGATC
3' ss Score
12.09
5' ss Seq
AATGTTAGT
5' ss Score
-1.83
Exon sequences
Seq C1 exon
ACTTGCGAGTGGAGGGCTTGTTTAGAGTACCAGGCAACAGTGTTCGACAGCAGCTTTTGAGGGATGCTCTCAATAACGGGACTGATATTGACTTGGATTCAGGAGAGTTTCACTCAAATGATGTGGCCACGCTGCTGAAGATGTTTCTAGGAGAGTTACCCGAGCCCCTGCTGACCCATAAACATTTTCATGTACACCTCAAAATTGCTG
Seq A exon
ATCTGATGCAGTTTGATGATAAAGGAAATAAGACCAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAGACAGCGAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCAAAAAT
Seq C2 exon
GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025154-'13-9,'13-8,15-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(42.9=100)
A:
PF0062022=RhoGAP=FE(46.0=100)
C2:
PF0062022=RhoGAP=PD(2.5=13.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCGAGTGGAGGGCTTG
R:
AAAAGTTTCTGAGAGTGTTTGATCA
Band lengths:
292-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types