RnoEX0010961 @ rn6
Exon Skipping
Gene
ENSRNOG00000048166 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:RGD Symbol;Acc:1593044]
Coordinates
chr1:261030138-261033550:-
Coord C1 exon
chr1:261033341-261033550
Coord A exon
chr1:261030995-261031221
Coord C2 exon
chr1:261030138-261030224
Length
227 bp
Sequences
Splice sites
3' ss Seq
TATTTTGTTTTGTTTTCAAGATC
3' ss Score
8.22
5' ss Seq
AATGTTAGT
5' ss Score
-1.83
Exon sequences
Seq C1 exon
ACTTGCGAGTAGAGGGCTTGTTTAGAGTACCAGGCAACAGTGTCCGACAGCAGCTTTTGAGGGATGCTCTCAATAATGGGACCGACATCGATTTGGATTCAGGAGAGTTTCACTCAAACGATGTAGCCACGCTGCTGAAGATGTTTCTAGGAGAGTTACCAGAGCCCCTGCTGACCCATAAACATTTTCATGTACACCTCAAAATTGCTG
Seq A exon
ATCTGATGCAGTTTGATGATAAAGGAAATAAGACTAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTAATCCTCCCTCCAGCCAATCGGAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAAACAGCGAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCGCCCCATGTCCTGTGGCCCAAAAAT
Seq C2 exon
GTCACTGCAAATGACCTTCAGGAGAATATCACGAAGTTAAACACGGGGATGGCTTTTATGATCAAACACTCTCAGAAACTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048166-'13-9,'13-8,14-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.034
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(42.9=100)
A:
PF0062022=RhoGAP=FE(46.0=100)
C2:
PF0062022=RhoGAP=PD(2.5=13.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCGAGTAGAGGGCTTGT
R:
AGAGTTTCTGAGAGTGTTTGATCA
Band lengths:
292-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]