HsaEX6089789 @ hg19
Exon Skipping
Gene
ENSG00000213390 | ARHGAP19
Description
Rho GTPase activating protein 19 [Source:HGNC Symbol;Acc:23724]
Coordinates
chr10:99016075-99023386:-
Coord C1 exon
chr10:99023177-99023386
Coord A exon
chr10:99019159-99019385
Coord C2 exon
chr10:99016075-99016161
Length
227 bp
Sequences
Splice sites
3' ss Seq
AATTCTCTTTTGTCCTCAAGATT
3' ss Score
5.41
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
ACTTGCGAGTAGAGGGTTTGTTTAGAGTACCGGGTAATAGTGTCCGACAGCAGATTTTAAGGGATGCTCTCAATAATGGAACTGACATTGACTTGGAATCAGGGGAATTTCACTCAAATGATGTTGCCACTTTGCTGAAGATGTTTCTAGGAGAGTTGCCGGAGCCTCTGCTGACACATAAACACTTCAATGCACACCTCAAAATCGCTG
Seq A exon
ATTTGATGCAGTTTGATGATAAAGGAAACAAGACCAATATACCAGACAAGGACCGGCAAATTGAGGCTCTCCAGTTGCTCTTCCTCATTCTCCCTCCTCCTAATCGTAATTTGCTGAAGTTATTGCTTGATCTCCTATACCAGACAGCAAAGAAACAAGACAAGAACAAGATGTCAGCCTATAACCTTGCCCTTATGTTTGCACCCCATGTCCTGTGGCCAAAAAAT
Seq C2 exon
GTCACTGCAAATGACCTTCAGGAGAATATCACAAAGTTAAACAGTGGGATGGCTTTTATGATTAAACACTCCCAGAAACTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213390-'7-9,'7-6,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.034
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(42.9=100)
A:
PF0062022=RhoGAP=FE(46.0=100)
C2:
PF0062022=RhoGAP=PD(2.5=13.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCGAGTAGAGGGTTTGT
R:
AAAAGTTTCTGGGAGTGTTTAATCA
Band lengths:
293-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)