HsaEX0005436 @ hg38
Exon Skipping
Gene
ENSG00000213390 | ARHGAP19
Description
Rho GTPase activating protein 19 [Source:HGNC Symbol;Acc:HGNC:23724]
Coordinates
chr10:97243968-97256404:-
Coord C1 exon
chr10:97256318-97256404
Coord A exon
chr10:97246272-97246337
Coord C2 exon
chr10:97243968-97244159
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTATGTCCTGCCCAGGCT
3' ss Score
7.26
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCACTGCAAATGACCTTCAGGAGAATATCACAAAGTTAAACAGTGGGATGGCTTTTATGATTAAACACTCCCAGAAACTTTTTAAG
Seq A exon
GCTCCTGCTTACATTCGGGAGTGTGCGAGATTGCACTATTTGGGATCCAGAACTCAGGCATCAAAG
Seq C2 exon
GATGACCTTGACCTCATAGCTTCATGTCATACTAAGTCCTTTCAGCTGGCAAAGTCTCAGAAACGGAACCGGGTAGATTCCTGCCCTCACCAGGAGGAGACCCAGCACCATACGGAAGAGGCACTGAGAGAGCTGTTTCAACACGTTCATGATATGCCAGAGTCAGCAAAGAAGAAACAACTTATTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213390_MULTIEX2-5/6=4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.684
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(2.5=13.8)
A:
PF0062022=RhoGAP=PD(1.2=9.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGCAAATGACCTTCAGGA
R:
CCTGGTGAGGGCAGGAATCTA
Band lengths:
181-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development